sigsBrain: Dataframe of gene expression for purified brain cell-types as...

Description Usage Format

Description

Dataframe of gene expression for purified brain cell-types as collated and benchmarked in Sutton et al. (2021). Rows are Ensembl Gene IDs, while columns are cell-types. The signatures are as follows, with full descriptions and recommendations for use in our publication

Usage

1

Format

A list of lists with 10 levels corresponding to the different datasets with purified brain gene expression

F5

cultured cells from the FANTOM5 consortium. Contains only Neurons and Astrocytes

IP

immunopurified whole-cells from the human cortex from Zhang et al., 2016

DM
MM

immunopurified whole-cells from the mouse cortex from Zhang et al., 2014

VL
NG
CA

single-nucleus RNA-sequencing of post-mortem human from the Human Cell Atlas

TS
LK

single-nucleus RNA-sequencing of post-mortem human tissue from Lake et al., 2018. Does not contain Endothelia

MB

unawaz1996/brainyR documentation built on Dec. 23, 2021, 2 p.m.