In this vignette we show how to use the funcharts
package to apply the methods proposed in Capezza et al. (2020) to build control charts for monitoring scalar quality characteristic adjusted for by the effect of functional covariates, based on scalar-on-function regression.
Let us show how the funcharts
package works through an example with the dataset air
,
which has been included from the R package FRegSigCom
and is used in the paper of Qi and Luo (2019).
The authors propose a function-on-function regression model of the NO2
functional variable on all the other functional variables available in the dataset.
In order to show how the package works, we consider a scalar-on-function regression model, where we take the mean of NO2
at each observation as the scalar response and all other functions as functional covariates.
First of all, starting from the discrete data, let us build the multivariate functional data objects of class mfd
, see vignette("mfd")
.
library(funcharts) data("air") fun_covariates <- names(air)[names(air) != "NO2"] mfdobj_x <- get_mfd_list(air[fun_covariates], grid = 1:24)
Then, we extract the scalar response variable, i.e. the mean of NO2
at each observation:
y <- rowMeans(air$NO2)
In order to perform the statistical process monitoring analysis, we divide the data set into a phase I and a phase II dataset.
rows1 <- 1:300 rows2 <- 301:355 mfdobj_x1 <- mfdobj_x[rows1] mfdobj_x2 <- mfdobj_x[rows2] y1 <- y[rows1] y2 <- y[rows2]
We can build a scalar-on-function linear regression model where the response variable is a linear function of the multivariate functional principal components scores.
The principal components to retain in the model can be selected with selection
argument.
Three alternatives are available (default is variance
):
tot_variance_explained
,single_min_variance_explained.
This criterion is used in Capezza et al. (2020).Here, we use default values:
mod <- sof_pc(y = y1, mfdobj_x = mfdobj_x1)
As a result you get a list with several arguments, among which the original data used for model estimation, the result of applying pca_mfd
on the multivariate functional covariates, the estimated regression model.
It is possible to plot the estimated functional regression coefficients, which is also a multivariate functional data object of class mfd
:
plot_mfd(mod$beta)
Moreover bootstrap can be used to obtain uncertainty quantification:
plot_bootstrap_sof_pc(mod, nboot = 10)
We can build the regression control chart to monitor the scalar response, as performed in Capezza et al. (2020).
The function regr_cc_sof
provides a data frame with all the information required to plot the desired control charts.
Among the arguments, you can pass the arguments y_tuning
and mfdobj_x_tuning
set, that are not used for model estimation/training, but only to estimate control chart limits.
If these arguments are not provided, control chart limits are calculated on the basis of the training data.
The arguments y_new
and mfdobj_x_new
contain the phase II data set of observations of the scalar response and the functional covariates to be monitored, respectively.
The function plot_control_charts
returns the plot of the control charts.
cclist <- regr_cc_sof(object = mod, y_new = y2, mfdobj_x_new = mfdobj_x2) plot_control_charts(cclist)
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