In usgs/nabatr: R Tools for Accessing and Manipulating North American Bat Monitoring Data

Get a token for NABat Database

library(nabatr)
# Enter your NABat username here
username = 'NABat_Username'
token = get_nabat_gql_token(username)
token

# Note: if you leave run token = get_nabat_gql_token(),
#   it will prompt you for a username and then a password

View all of the sample frames in Nabat to use ID for covar data

# Refresh token
token = get_refresh_token(token)

sample_frames_df = get_sample_frames(token = token)
# View sampe frames dataframe
sample_frames_df

View all covariates available

# Refresh token
token = get_refresh_token(token)

covariates_df = get_covariates(token = token)
# View covariates dataframe
covariates_df

View 1 covariate at each grts cell across 1 sample frame

# Refresh token
token = get_refresh_token(token)
# Set your covariate and sample frame ids.  Use the sample_frames_df and covariate_df to 
## select the ids to search by
covariate_id = 0
sample_frame_id = 14

grts_covars_df = get_grts_covariate(token = token,
                                covariate_id = covariate_id, 
                                sample_frame_id = sample_frame_id)
# View grts covars dataframe
grts_covars_df

usgs/nabatr documentation built on Jan. 28, 2024, 7:10 a.m.