tdapply: Apply a function over all treedata object columns and return...

In uyedaj/treeplyr: 'dplyr' Functionality for Matched Tree and Data Objects

Apply a function over all treedata object columns and return a list of results, analogously to the normal apply function

Description

Apply a function over all treedata object columns and return a list of results, analogously to the normal apply function

Usage

tdapply(tdObject, MARGIN, FUN, ...)

Arguments

tdObject	A treedata object
MARGIN	the margin over which the data is applied (e.g. 1 = rows, 2 = columns)
FUN	A function to apply over the data frame
...	Additional parameters passed on to FUN

Details

Note that if the parameter phy is specified in the additional parameters (i.e. '...'), then it will be substituted with the treedata object $phy.

Examples

data(anolis)
td <- make.treedata(anolis$phy, anolis$dat)
td %>% forceNumeric(.) %>% tdapply(., 2, phytools::phylosig, tree=phy)

uyedaj/treeplyr documentation built on Feb. 22, 2025, 8:32 p.m.