find_recomb_names: Find sequence pairs which pairwise genetic distances follow...

In v-julia/recDplot: Visualisation of recombination events in nucleotide sequences using pairwise distance plots

Find sequence pairs which pairwise genetic distances follow the condition Returns dataframe with names of sequences pairs which pairwise nucleotide distances lay between values val11-val12 in genomic region 1 and values val21-val22 in genomic region 2.

Description

Find sequence pairs which pairwise genetic distances follow the condition Returns dataframe with names of sequences pairs which pairwise nucleotide distances lay between values val11-val12 in genomic region 1 and values val21-val22 in genomic region 2.

Usage

find_recomb_names(distM1, val11, val12, distM2, val21, val22)

Arguments

distM1	matrix with pairwise nucleotide distances between sequences in genome region 1
val11	the lowest value in distance interval in region 1
val12	the highest value in distance interval in region 1
distM2	matrix with pairwise nucleotide distances between sequences in genome region 2
val21	the lowest value in distance interval in region 2
val22	the highest value in distance interval in region 2

Value

dataframe with the following columns: "name1 name2 distance_in_region1 distance_in_region2"

v-julia/recDplot documentation built on Feb. 20, 2024, 1:59 p.m.