Man pages for vagnerfonseca/fifer
A Biostatisticians Toolbox for Various Activities, Including Plotting, Data Cleanup, and Data Analysis

anchored.gradientCreate a color gradient with a color for zero
auto.layoutAutomatically select the layout.
boxcoxRTransform data using a boxcox transformation for significant differences among all pairs of...
clearClear memory of all objects
colored.tableCreate a color-coded table in latex
compute.thetaCalculate inverse tangent.
contentsView the contents (functions) of a package
cor2covCorrelation Matrix to Covariance Matrix Conversion
demographicsSummarize a Data Set (Demographics)
densityPlotRGenerate a density plot using a formula
drop.columnsDrop (or keep) all columns containing a vector of strings
ellipsePlots an Ellipse
excelColsGenerate Excel column labels
excelMatchObtain column number or variable name from Excel named...
fakeMedicalDataFictitious Medical Dataset
get.colsExtract column index
gradient.legendCreate a gradiented legend
hashCreate useless hashes
imageInteractionPlot an two-way quantitative interaction in an image plot
intersperseIntersperse elements of Two+ Vectors
last.sampleReturn only one row per ID
make.formulaConvert strings to a formula
make.nullDrop or keep variables in a dataset
make.symmetricForce a matrix to be symmetric
missing.valsSummary of Missing Data
mv.rnormRandomly Generate Multivariate Normal Data from numbers to colors
par1Change default par parameters
par2Change default par parameters
plot.rfInterpPlot rfInterp Summary
plot.rfPredPlot rfPred Summary
plot.rfThreshrfThesh Summary
plotSigBarsAdd significance bars to a prism plot
print.rfInterpPrint rfInterp Summary
print.rfPredPrint rfPred Summary
print.rfThreshPrint rfThesh Summary
printxChange Defaults of print.xtable
prism.plotsPlot prism-like Plots
pval.xtableConvert p-values into strings with inequalities.
rExtract variable column indices
random.correlationGenerate a random correlation matrix
r.critCompute critical r or p.
read.fifeRead in a dataset and load the meta-data for a file
rfInterpVariable Selection with Random Forest
rfPredVariable selection in Random Forest
rfSensitivityOutput accuracy, sensitivity, specificity, NPV, and PPV.
rfThreshVariable Selection Using Random Forests
rotateGraphRotate a graph using polar coordinates
roxtempGenerate a Roxygen Template
scaleBStandardize coefficients
scaleBreakScatterplot with a Scale Break
scaleItScale a variable
spearman.plotSpearman plot
stratifiedSample from a 'data.frame' according to a stratification... between strings to colors
subsetStringExtract only part of a string
SummarizeContinuousDefaultSummarize a continuous vector with mean plus/minus standard...
SummarizeFactorDefaultSummarize a factor vector with count and percentages
SummarizeVarSummarize a vector (continuous or factor)
summary.rfPredPrint a Summary Table of rfPred
unfactorConvert a factor to a character (or number)
univariate.testsExtract p values for a data frame
write.fifeWrite a dataset and load the meta-data
xtable.rfInterpPrepare xtable Summary
xtable.rfPredPrepare xtable Summary
z.testPerform a z test
vagnerfonseca/fifer documentation built on May 3, 2019, 4:06 p.m.