Files in valeriabonapersona/abc4d
Analysis of Brain Cells in 4 Dimensions
.Rbuildignore
.github/.gitignore
.github/workflows/R-CMD-check.yaml
.github/workflows/pkgdown.yaml
.gitignore
.travis.yml
CITATION.md
DESCRIPTION
LICENSE.md
NAMESPACE
R/cleaning_functions.R
R/data.R
R/find_most_active.R
R/high_density.R
R/manage_aba_atlas.R
R/order_brain_areas.R
R/pairwise_analysis.R
R/strategy.R
R/summarize_to_region.R
R/utils.R
README.md
_pkgdown.yml
data/atlas_estimation.rda
data/atlas_tree.rda
data/cfos_expression_aba.rda
data/example.rda
data/mask.rda
docs/404.html
docs/CITATION.html
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docs/articles/tutorials.html
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docs/reference/adapt_estimation_atlas.html
docs/reference/atlas_estimation.html
docs/reference/atlas_tree.html
docs/reference/calculate_density.html
docs/reference/categorize_strategy.html
docs/reference/cfos_expression_aba.html
docs/reference/clean_counts.html
docs/reference/example.html
docs/reference/figures/cheatsheet.png
docs/reference/figures/cheatsheet.svg
docs/reference/figures/cheatsheet_svg.svg
docs/reference/figures/logo.svg
docs/reference/find_all_children.html
docs/reference/find_changed_strategy.html
docs/reference/find_children.html
docs/reference/find_intercept.html
docs/reference/find_most_active.html
docs/reference/find_parents.html
docs/reference/from_aba_api_to_df.html
docs/reference/hello.html
docs/reference/index.html
docs/reference/mask.html
docs/reference/normalize-1.png
docs/reference/normalize.html
docs/reference/order_brain_areas.html
docs/reference/pairwise_activation.html
docs/reference/plotting_all_coordinates_2d.html
docs/reference/plotting_coordinates_2d.html
docs/reference/prepare_sim_weights.html
docs/reference/preprocess_per_region.html
docs/reference/remove_blinding.html
docs/reference/samples_files_to_df.html
docs/reference/sim_most_active.html
docs/reference/sim_most_active_one_batch.html
docs/reference/specify_damage.html
docs/reference/summarize_per_region.html
docs/reference/voxelize.html
img/abc4d.svg
img/logo_readme.png
man/adapt_estimation_atlas.Rd
man/atlas_estimation.Rd
man/atlas_tree.Rd
man/calculate_density.Rd
man/categorize_strategy.Rd
man/cfos_expression_aba.Rd
man/clean_counts.Rd
man/example.Rd
man/figures/cheatsheet.svg
man/figures/logo.svg
man/find_all_children.Rd
man/find_changed_strategy.Rd
man/find_children.Rd
man/find_intercept.Rd
man/find_most_active.Rd
man/find_parents.Rd
man/from_aba_api_to_df.Rd
man/hello.Rd
man/mask.Rd
man/normalize.Rd
man/order_brain_areas.Rd
man/pairwise_activation.Rd
man/plotting_all_coordinates_2d.Rd
man/plotting_coordinates_2d.Rd
man/prepare_sim_weights.Rd
man/preprocess_per_region.Rd
man/remove_blinding.Rd
man/samples_files_to_df.Rd
man/sim_most_active.Rd
man/sim_most_active_one_batch.Rd
man/specify_damage.Rd
man/summarize_per_region.Rd
man/voxelize.Rd
pkgdown/favicon/apple-touch-icon-120x120.png
pkgdown/favicon/apple-touch-icon-152x152.png
pkgdown/favicon/apple-touch-icon-180x180.png
pkgdown/favicon/apple-touch-icon-60x60.png
pkgdown/favicon/apple-touch-icon-76x76.png
pkgdown/favicon/apple-touch-icon.png
pkgdown/favicon/favicon-16x16.png
pkgdown/favicon/favicon-32x32.png
pkgdown/favicon/favicon.ico
renv.lock
renv/.gitignore
renv/activate.R
renv/settings.dcf
tests/.DS_Store
tests/testthat.R
tests/testthat/test_cleaning_functions.R
tests/testthat/test_find_most_active.R
tests/testthat/test_high_density.R
tests/testthat/test_order_brain_areas.R
tests/testthat/test_pairwise_analysis.R
tests/testthat/test_regionbased_dataframe.R
tests/testthat/test_strategy.R
tests/testthat/test_tryout.R
vignettes/01_cleandata.Rmd
vignettes/abc4d.Rmd
vignettes/img/abc4d_datacleaning.svg
vignettes/img/abc4d_pipeline.svg
vignettes/img/preabc4d.svg
