find_all_children: Find smaller areas (children) of a larger brain area...

Description Usage Arguments Examples

View source: R/manage_aba_atlas.R

Description

The Allen Brain Atlas is organized with a tree structure, where smaller brain areas (e.g. nuclei) are grouped into larger brain areas. Given a particular (child) acronym, this function finds all sub-brain areas, and returns them as a string. This function returns children that are parents themselves, as well their children (i.e., grandchildren (etc.) of the parent structure provided).

Usage

1
find_all_children(atlas, parent)

Arguments

atlas

Data frame with (at least) two character variables: one for the parents (parent_acronym), and one for the children (acronym).

parent

Acronym of the parent brain area. It must be a character vector of length 1.

Examples

1
2
3
4
5
6
x <- data.frame(
parent_acronym = c(rep("main_parent", 3), rep("child_with_children", 2), "grandchild_with_children"),
acronym = c("main_parent", "child_with_children", "child_without_children", "grandchild_with_children", "grandchild_without_children", "great_grandchild"))
this_parent <- "child_with_children"

find_all_children(atlas = x, parent = this_parent)

valeriabonapersona/abc4d documentation built on Dec. 23, 2021, 2:09 p.m.