| addARTCov | addARTCov |
| addCircumVar | Adds the ever circumcised variable to an existing dataset. |
| addHIVPrevBS | addHIVPrevBS |
| addMigrVars | addMigrVars |
| AggByAge | Aggregates sero events and person years by age category. |
| AggByYear | Aggregates sero events and person years by year. |
| AggFunc | Function for making the AggByYear and AggByAge functions. |
| ahri | ahri: R package for estimating HIV incidence with the AHRI... |
| calcARTCov | calcARTCov |
| calcPoisExact | Calculate crude incidence rates using the Poisson exact... |
| check_getFiles | check_getFiles |
| check_var | check_var |
| dropTasPData | Drop TasP (Northern Areas) from a dataframe. |
| gdat_demo | Example datasets for G-imputation |
| getAgeYear | Calculate mean age by year. |
| getARTDates | Get ART initiation dates from Surveillance Episodes dataset. |
| getBirthDate | Gets the birthdates form the Surveillance Episodes dataframe. |
| getBSData | Read in the standard Bounded Structures .dta dataset. |
| getBSMax | Gets the BSIntID that IIntID spent most time in a... |
| getCircumcisionData | Gets circumcision data from the MGH dataset. |
| getCondomUseVar | Get variable for ever used condom status from Men and Women's... |
| getDates | getDates |
| getDatesMax | Function to get latest HIV test dates |
| getDatesMin | Function to get earliest HIV test dates. |
| getEpisodes | Load the standard Surveillance Episodes dataframe into... |
| getEverART | Creates an Ever on ART variable. |
| getGImpute | Add theimputed infection times to an existing dataframe. |
| getHIV | Loads the standard HIV dataset into R. |
| getIncData | Function to impute serodate, split at censoring date, and set... |
| getIncidence | Calculate annual HIV incidence rates using the single... |
| getMGH | Loads the Men's general health (MGH) dataframe into memory. |
| getRTData | Creates a dataset for HIV repeat-testers. |
| getWGH | Loads the Women's general health (WGH) dataframe into memory. |
| getYearDates | Get the numeric version of date for 01JanXXXX. |
| gImpute | Uses the G-imputation method to impute the HIV sero date... |
| imputeEndPoint | Impute a end-point seroconversion date within the censored... |
| imputeMidPoint | Impute a mid-point seroconversion date within the censored... |
| imputeRandomPoint | Impute random seroconversion date(s) within the censored... |
| makeAgeVars | Function for making Age and AgeCat variables |
| makeMigrVars | makeMigrVars |
| makePropRes | Makes a variable of the proportion of time that a participant... |
| MIaggregate | Aggregates the HIV incidence results after mutiple... |
| MIdata | Function to generate multiple datasets with imputed serodate. |
| MIpredict | Predict incidence rate estimates after multiple imputation. |
| readARTCov | readARTCov |
| readEpisodes | Read in the standard Surveillance .dta dataset. |
| readHealthData | readHealthData |
| readHIVData | Reads the standard HIV .dta file into R. |
| readMGH | Reads the standard Men (MGH) General Health .dta dataset into... |
| readUniRegResults | Read the results from the unireg model into dataframe. |
| readWGH | Reads the standard Women's General Health (WGH) .dta dataset... |
| rtdat_demo | Example datasets for G-imputation |
| runUniReg | runUniReg |
| setAge | Set age according to user arguments. |
| setArgs | Set arguments and parameters to control functions and data... |
| setData | Sets data according to a list of arguments. |
| setEpisodes | Subset the Surveillance Episodes dataframe by user arguments. |
| setFiles | Set the path and filenames to the standard AHRI datasets.... |
| setHIV | Subsets the HIV dataset according to user arguments. |
| splitAtEarlyPos | Split data at the earliest HIV-positive date. |
| splitAtSeroDate | Split data at the imputed seroconversion date. |
| splitData2 | Function for splitting data into episodes. |
| test_ahri_dta | test_ahri_dta |
| test_ahri_hiv | test_ahri_hiv |
| test_ahri_set | test_ahri_set |
| uniReg | uniReg |
| uniRegOne | uniRegOne |
