API for vari-bbc/bbcRNA
Bulk RNA-seq workflow for VAI BBC
| Global functions | |
|---|---|
| .BbcEdgeR | Man page |
| .BbcSE | Man page |
| BbcEdgeR | Man page Source code |
| BbcEdgeR-class | Man page |
| BbcSE | Man page Source code |
| BbcSE-class | Man page |
| [,BbcSE,ANY,ANY,ANY-method | Man page |
| [<-,BbcSE,ANY,ANY,BbcSE-method | Man page |
| `aln_metrics<-` | Source code |
| `de_results<-` | Source code |
| `dgelist<-` | Source code |
| `edger<-` | Source code |
| `norm_cts<-` | Source code |
| aln_metrics | Man page Source code |
| aln_metrics<- | Man page |
| batch_correct_norm_cts | Man page Source code |
| bbcRNA | Man page |
| cbind,BbcSE-method | Man page |
| de_results | Man page Source code |
| de_results<- | Man page |
| deseq2 | Man page Source code |
| dgelist | Man page Source code |
| dgelist<- | Man page |
| edger | Man page Source code |
| edger<- | Man page |
| ens2entrez | Man page Source code |
| ens2sym | Man page Source code |
| findDEGs | Man page |
| findDEGs,BbcSE-method | Man page |
| findDEGs,DGEList-method | Man page |
| find_missing_in_gseaResult | Man page Source code |
| get_de_table | Man page Source code |
| lists_to_edger_contrasts | Man page Source code |
| makeDGEList | Man page Source code |
| norm_cts | Man page Source code |
| norm_cts<- | Man page |
| normalize_counts | Man page |
| normalize_counts,BbcSE-method | Man page |
| normalize_counts,DGEList-method | Man page |
| plot_PCA | Man page Source code |
| plot_aln_metrics | Man page Source code |
| plot_heatmap | Man page Source code |
| plot_pval_distrib | Man page Source code |
| plot_volcano | Man page Source code |
| prep_clusterprofiler_genelist | Man page Source code |
| rbind,BbcSE-method | Man page |
| read_col_meta | Man page Source code |
| read_star_aln_metrics | Man page Source code |
| run_gsea | Man page |
| run_gsea,BbcSE-method | Man page |
| run_gsea,data.frame-method | Man page |
| run_hypergeometric | Man page |
| run_hypergeometric,BbcSE-method | Man page |
| run_hypergeometric,data.frame-method | Man page |
| searchBM | Man page Source code |
| shorten_desc | Man page |
| shorten_desc,enrichResult-method | Man page |
| shorten_desc,gseaResult-method | Man page |
| show,BbcSE-method | Man page |
| star_to_mat | Man page Source code |
