read_star_aln_metrics: Import STAR Log.final.out files for analyzing mapping rates.
In vari-bbc/bbcRNA: Bulk RNA-seq workflow for VAI BBC
Description
Usage
Arguments
Details
Value
Description
read_star_aln_metrics returns a dataframe from STAR Log.final.out files.
Usage
1
read_star_aln_metrics(dir, rgx)
Arguments
dir
A character scalar indicating the directory containing all the
STAR Log.final.out files.
rgx
A character scalar representing a regex used to parse out the
sample name from the name of the Log.final.out files.
Details
This function will read in all the '*Log.final.out' files in the specified
directory and returns a dataframe with alignment metrics.
Value
A dataframe.
vari-bbc/bbcRNA documentation built on Nov. 10, 2020, 11:09 p.m.
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Description Usage Arguments Details Value
Description
read_star_aln_metrics returns a dataframe from STAR Log.final.out files.
Usage
1 | read_star_aln_metrics(dir, rgx)
|
Arguments
dir |
A character scalar indicating the directory containing all the STAR Log.final.out files. |
rgx |
A character scalar representing a regex used to parse out the sample name from the name of the Log.final.out files. |
Details
This function will read in all the '*Log.final.out' files in the specified directory and returns a dataframe with alignment metrics.
Value
A dataframe.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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