bcbrun: Normalize SummarizedExperiment from bcbreader function.
In vbarrera/bcbioLite: bcbioLite
Description
Usage
Arguments
Examples
Description
This function will detect if the object contains the slots from
salmon quantification or featureCounts and normalize the data
using DESeq2. It will update raw, normalized and vst slots in a
SummarizedExperiment object.
Usage
1
bcbrun(se, design = ~1)
Arguments
se
SummarizedExperiment object generated by readBCBIO.
Examples
1
2
vbarrera/bcbioLite documentation built on Oct. 21, 2020, 3:03 p.m.
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Description Usage Arguments Examples
Description
This function will detect if the object contains the slots from salmon quantification or featureCounts and normalize the data using DESeq2. It will update raw, normalized and vst slots in a SummarizedExperiment object.
Usage
1 | bcbrun(se, design = ~1)
|
Arguments
se |
SummarizedExperiment object generated by readBCBIO. |
Examples
1 2 |
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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