edm_nearest: Calculates the shortest euclidean distance found for every...

In vbonhomme/Momocs: Morphometrics using R

Calculates the shortest euclidean distance found for every point of one matrix among those of a second.

Description

edm_nearest calculates the shortest euclidean distance found for every point of one matrix among those of a second. In other words, if m1, m2 have n rows, the result will be the shortest distance for the first point of m1 to any point of m2 and so on, n times. This function is used internally but may be of interest for other analyses.

Usage

edm_nearest(m1, m2, full = FALSE)

Arguments

m1	The first list or matrix of coordinates.
m2	The second list or matrix of coordinates.
full	logical. Whether to returns a condensed version of the results.

Details

So far this function is quite time consumming since it performs n \times n euclidean distance computation. If one wishes to align two (or more shapes) Procrustes surimposition may provide a better solution.

Value

If full is TRUE, returns a list with two components: d which is for every point of m1 the shortest distance found between it and any point in m2, and pos the (m2) row indices of these points. Otherwise returns d as a numeric vector of the shortest distances.

See Also

ed, edm, dist.

Examples

x <- matrix(1:10, nc=2)
edm_nearest(x, x+rnorm(10))
edm_nearest(x, x+rnorm(10), full=TRUE)

vbonhomme/Momocs documentation built on Nov. 13, 2023, 8:54 p.m.