diann_matrix: Generate a matrix with quantities. Zero quantities will be...

In vdemichev/diann-rpackage: Report processing and protein quantification for MS-based proteomics

Description

Generate a matrix with quantities. Zero quantities will be replaced with NA values.

Usage

diann_matrix(
  x,
  id.header = "Precursor.Id",
  quantity.header = "Precursor.Normalised",
  proteotypic.only = F,
  q = 0.01,
  protein.q = 1,
  pg.q = 1,
  gg.q = 1
)

Arguments

x	DIA-NN report
id.header	protein/peptide/precursor Id column name
quantity.header	quantity column name
proteotypic.only	only proteotypic peptides and the respective proteins should be considered?
q	precursor q-value threshold
protein.q	uniquely identified protein q-value threshold
pg.q	protein group q-value threshold
gg.q	gene group q-value threshold

vdemichev/diann-rpackage documentation built on May 11, 2020, 12:57 p.m.