allele.check: allele.check

In veera-dr/predixcantools: predixcantools

Description

allele.check

Usage

allele.check(summary, dbweights, snp.col = "rsid", effect.allele.col = "a1",
  alt.allele.col = "a2", beta.col = "beta")

Arguments

summary	summary data frame
dbweights	db weights produced by function extract_weights
snp.col	snp column in summary
effect.allele.col	effect allele column in summary
alt.allele.col	alternative allele column in summary
beta.col	beta column in summary; if you have odds ration, change it beta by log(odds ratio)

veera-dr/predixcantools documentation built on May 3, 2019, 4:59 p.m.