PCMTreeDtNodes: A data.table with time, part and regime information for the...

In venelin/PCMBase: Simulation and Likelihood Calculation of Phylogenetic Comparative Models

A data.table with time, part and regime information for the nodes in a tree

Description

A data.table with time, part and regime information for the nodes in a tree

Usage

PCMTreeDtNodes(tree)

Arguments

tree	a phylo object with node-labels and parts

Value

a data.table with a row for each node in tree and columns as follows:

• startNode the starting node of each edge or NA_integer_ for the root

• endNode the end node of each edge or the root id for the root

• startNodeLab the character label for the startNode

• endNodeLab the character label for endNode

• startTime the time (distance from the root node) for the startNode or NA_real_ for the root node

• endTime the time (distance from the root node) for the endNode or NA_real_ for the root node

• part the part to which the edge belongs, i.e. the part of the endNode

• regime the regime to which the edge belongs, i.e. the regime of the part of the endNode

Examples

PCMTreeDtNodes(PCMBaseTestObjects$tree.ab)

venelin/PCMBase documentation built on March 14, 2024, 8:24 p.m.