PCMTreeVCV: Phylogenetic Variance-covariance matrix
In venelin/PCMBase: Simulation and Likelihood Calculation of Phylogenetic Comparative Models
PCMTreeVCV R Documentation
Phylogenetic Variance-covariance matrix
Description
This is a simplified wrapper for ape's vcv function. Setting
the runtime option PCMBase.UsePCMVarForVCV to TRUE will switch to a
computation of the matrix using the function PCMVar.
Usage
PCMTreeVCV(tree)
Arguments
tree
a phylo object
Value
a N x N matrix. Assuming a BM model of evolution, this is a matrix
in which element (i,j) is equal to the shared root-distance of the nodes i
and j.
See Also
vcv PCMVar PCMOptions
venelin/PCMBase documentation built on March 14, 2024, 8:24 p.m.
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| PCMTreeVCV | R Documentation |
Phylogenetic Variance-covariance matrix
Description
This is a simplified wrapper for ape's vcv function. Setting
the runtime option PCMBase.UsePCMVarForVCV to TRUE will switch to a
computation of the matrix using the function PCMVar.
Usage
PCMTreeVCV(tree)
Arguments
tree |
a phylo object |
Value
a N x N matrix. Assuming a BM model of evolution, this is a matrix in which element (i,j) is equal to the shared root-distance of the nodes i and j.
See Also
vcv PCMVar PCMOptions
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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