posK: Indices of different parts of an MCMCState in an...

In venelin/PCMBayes: Bayesian inference for multivariate Phylogenetic Comparative Models

Description

The different parts of an MCMCState are described in MCMCStateVector. posK returns the osition of the number of shifts (this is always equal to 1). See the section functions for the others.

Usage

posK(s, ctx = NULL)

posn(s, ctx = NULL)

posl(s, ctx = NULL)

posr(s, ctx = NULL)

posm(s, ctx = NULL)

posv(s, ctx = NULL)

Arguments

s	a MCMCState or a MCMCStateVector object.
ctx	a MCMCContext object. This is needed only if s is MCMCStateVector object.

Value

an integer vector.

Functions

• posn: Positions of the shift nodes;

• posl: Positions of the offsets of the shift-points in tip-ward direction relative to the beginnings of the branches leading to shift nodes;

• posr: Position of the regime id's for each shift node;

• posm: Positions of the model type id's for each regime;

• posv: Positions of the model parameters.

See Also

MCMCState, MCMCStateVector

venelin/PCMBayes documentation built on Dec. 23, 2019, 6:39 p.m.