API for venelin/PCMFit
Maximum likelihood fit and selection of phylogenetic comparative models
| Global functions | |
|---|---|
| .cacheEnv | Man page |
| .onLoad | Source code |
| CleanTemporaryFitFiles | Source code |
| CollectBootstrapResultInternal | Source code |
| CollectBootstrapResults | Man page Source code |
| CombineTaskResults | Source code |
| ComposeMixedGaussianFromFits | Man page Source code |
| DefaultArgsConfigOptim | Man page Source code |
| EnforceBounds | Source code |
| GuessDefault | Source code |
| GuessInitVecParams | Man page Source code |
| GuessInitVecParams.BM | Source code |
| GuessInitVecParams.DOU | Source code |
| GuessInitVecParams.MixedGaussian | Source code |
| GuessInitVecParams.OU | Source code |
| GuessInitVecParams.PCM | Source code |
| GuessParameters | Source code |
| GuessSigma_x | Source code |
| GuessSigmae_x | Source code |
| GuessTheta | Source code |
| GuessX0 | Source code |
| HashCodes | Man page |
| InitTableFits | Source code |
| JitterModelParams | Man page Source code |
| LookupFit | Man page |
| MatchModelMapping | Man page Source code |
| MemoiseMax | Source code |
| PCMFit | Man page Source code |
| PCMFitDemoObjects | Man page |
| PCMFitMixed | Man page Source code |
| PCMFitModelMappingsToCladePartitions | Source code |
| PCMFitRecursiveCladePartition | Source code |
| PCMIteratorMapping | Man page Source code |
| PCMLoadMixedGaussianFromFitVector | Source code |
| PCMNextMapping | Man page Source code |
| RetrieveBestFitScore | Man page Source code |
| RetrieveBestModel | Man page Source code |
| RetrieveFittedModelsFromFitVectors | Man page Source code |
| RunOptim | Man page Source code |
| SaveCurrentResults | Source code |
| UpdateCladeFitsUsingSubModels | Source code |
| UpdateTableFits | Source code |
| coef.PCMFit | Source code |
| is.PCMFit | Man page Source code |
| is.PCMFitModelMappings | Man page Source code |
| logLik.PCMFit | Source code |
