Files in venelin/PCMFit
Maximum likelihood fit and selection of phylogenetic comparative models
.Rbuildignore
.gitattributes
.gitignore
.travis.yml
DESCRIPTION
NAMESPACE
PCMFit.Rproj
R/Defaults.R
R/GuessInitVecParams.R
R/JitterModelParams.R
R/PCMFit.R
R/PCMFitDemoObjects.R
R/PCMFitMixed.R
R/PCMFitModelMappingsToPartitions.R
R/PCMFitRecursiveCladePartition.R
R/PCMIterators.R
R/ParametricBootstrap.R
R/RunOptim.R
R/TableFits.R
R/Utilities.R
R/zzz.R
README.Rmd
README.md
_pkgdown.yml
data-raw/DefineParameterLimits.R
data-raw/MvtnormOLS.R
data-raw/PCMFitMixedExample.R
data-raw/TestMEEstimators.Rmd
data-raw/TestMEEstimators.pdf
data-raw/testMEEstimators.rda
data/PCMFitDemoObjects.rda
docs/404.html
docs/articles/index.html
docs/articles/parambootstrap.html
docs/articles/pcmfit.html
docs/articles/pcmfit_files/figure-html/unnamed-chunk-1-1.png
docs/articles/pcmfit_files/figure-html/unnamed-chunk-3-1.png
docs/articles/pcmfit_files/figure-html/unnamed-chunk-9-1.png
docs/articles/pcmfitmixed.html
docs/articles/pcmfitmixed_files/figure-html/unnamed-chunk-10-1.png
docs/authors.html
docs/docsearch.css
docs/docsearch.js
docs/index.html
docs/link.svg
docs/pkgdown.css
docs/pkgdown.js
docs/pkgdown.yml
docs/reference/CollectBootstrapResults.html
docs/reference/ComposeMixedGaussianFromFits.html
docs/reference/DefaultArgsConfigOptim.html
docs/reference/GuessInitVecParams.html
docs/reference/HashCodes.html
docs/reference/JitterModelParams.html
docs/reference/LookupFit.html
docs/reference/MatchModelMapping.html
docs/reference/PCMFit.html
docs/reference/PCMFitDemoObjects.html
docs/reference/PCMFitMixed.html
docs/reference/PCMIteratorMapping.html
docs/reference/PCMIteratorMapping2.html
docs/reference/PCMLoadMixedGaussianFromFitVector.html
docs/reference/PCMNextMapping.html
docs/reference/PCMNextMapping2.html
docs/reference/RetrieveBestFitScore.html
docs/reference/RetrieveBestModel.html
docs/reference/RetrieveFittedModelsFromFitVectors.html
docs/reference/UpdateCladeFitsUsingSubModels.html
docs/reference/dot-cacheEnv.html
docs/reference/index.html
docs/reference/is.PCMFit.html
docs/reference/is.PCMFitModelMappings.html
docs/reference/runOptim.html
docs/sitemap.xml
inst/CITATION
man/CollectBootstrapResults.Rd
man/ComposeMixedGaussianFromFits.Rd
man/DefaultArgsConfigOptim.Rd
man/GuessInitVecParams.Rd
man/HashCodes.Rd
man/JitterModelParams.Rd
man/LookupFit.Rd
man/MatchModelMapping.Rd
man/PCMFit.Rd
man/PCMFitDemoObjects.Rd
man/PCMFitMixed.Rd
man/PCMIteratorMapping.Rd
man/PCMNextMapping.Rd
man/RetrieveBestFitScore.Rd
man/RetrieveBestModel.Rd
man/RetrieveFittedModelsFromFitVectors.Rd
man/dot-cacheEnv.Rd
man/is.PCMFit.Rd
man/is.PCMFitModelMappings.Rd
man/runOptim.Rd
tests/testthat.R
tests/testthat/test-PMCIterators.R
vignettes/.gitignore
vignettes/DefineParameterLimits.R
vignettes/FitBootstrap_MGPM_A_F_BC2_RR.R
vignettes/FitBootstrap_MGPM_A_F_BC2_RR_bsub.sh
vignettes/REFERENCES-R.bib
vignettes/REFERENCES.bib
vignettes/ResultsBootstrap/MGPM_A_F_BC2_RR_BSID_1/MGPM_A_F_BC2_RR_BSID_1_clades__worker_17276.RData
vignettes/ResultsBootstrap/MGPM_A_F_BC2_RR_BSID_1/MGPM_A_F_BC2_RR_BSID_1_clades__worker_23300.RData
vignettes/parambootstrap.Rmd
vignettes/pcmfit.Rmd
vignettes/pcmfitmixed.Rmd
