Man pages for venelin/PCMFit
Maximum likelihood fit and selection of phylogenetic comparative models
| CollectBootstrapResults | Collect the results from a parametric bootstrap MGPM fit |
| ComposeMixedGaussianFromFits | Compose a MixedGaussian model |
| DefaultArgsConfigOptim | Specify arguments for PCMFit during calls to PCMFitMixed. |
| dot-cacheEnv | Internally used cache environment. |
| GuessInitVecParams | A heuristic-based guess of the optimal parameters of a model |
| HashCodes | Generate hash codes. |
| is.PCMFit | Check if an object is a PCMFit. |
| is.PCMFitModelMappings | Check if an object is a PCMFitModelMappings. |
| JitterModelParams | Add random white noise to the parameters of a model. |
| LookupFit | Lookup a fit vector for a given tree and model mapping in a... |
| MatchModelMapping | Match a model mapping vector against a vector of model types |
| PCMFit | Fitting a PCM model |
| PCMFitDemoObjects | Demo objects for the PCMFit package |
| PCMFitMixed | Search for an optimal mixed Gaussian phylogenetic model,... |
| PCMIteratorMapping | Iterator over combinations with repetions of a given set of... |
| PCMNextMapping | Generate the next mapping of model-types chosen from... |
| RetrieveBestFitScore | Retrieve the best fit from a PCMFitMappings object. |
| RetrieveBestModel | Retrieve the optimal PCM model from a PCMFit object |
| RetrieveFittedModelsFromFitVectors | Retrieve the ML fits from the fitVectors column in a table of... |
| runOptim | Calling optim a number of times |
