venelin/PCMView: Advanced Visualization of Phylogenetic Comparative Models

Phylogenetic comparative methods represent models of continuous trait data associated with the tips of a phylogenetic tree. Examples of such models are Gaussian continuous time branching stochastic processes such as Brownian motion (BM) and Ornstein-Uhlenbeck (OU) processes, which regard the data at the tips of the tree as an observed (final) state of a Markov process starting from an initial state at the root and evolving along the branches of the tree. Interpreting the parameters of such models is difficult in the case of multiple trait data and big trees. Building on top of the PCMBase and PCMFit R packages, PCMView provides functions for visualization of such continuous trait models.

Getting started

Package details

Authorc(person("Venelin", "Mitov", email = "[email protected]", role = c("aut", "cre", "cph")))
MaintainerVenelin Mitov <[email protected]>
LicenseGPL (>= 3.0)
Version0.1.0
URL https://venelin.github.io/PCMView/ https://github.com/venelin/PCMView
Package repositoryView on GitHub
Installation Install the latest version of this package by entering the following in R:
install.packages("remotes")
remotes::install_github("venelin/PCMView")
venelin/PCMView documentation built on Nov. 5, 2019, 12:01 p.m.