R/RcppExports.R

In villandre/CovidClusterAlgo: Library for Clustering Sequencing Data with the CovidCovariateCluster algorithm.

# Generated by using Rcpp::compileAttributes() -> do not edit by hand
# Generator token: 10BE3573-1514-4C36-9D1C-5A225CD40393

produceDistTipsAncestorsMatrixRcpp <- function(numTips, numNodes, branchMatchIndexVec, edgeLengthsVec, parentNumVec) {
    .Call('_CovidCluster_produceDistTipsAncestorsMatrixRcpp', PACKAGE = 'CovidCluster', numTips, numNodes, branchMatchIndexVec, edgeLengthsVec, parentNumVec)
}

getMRCA_Rcpp <- function(parentNumVec, tipsNumVec, numTips) {
    .Call('_CovidCluster_getMRCA_Rcpp', PACKAGE = 'CovidCluster', parentNumVec, tipsNumVec, numTips)
}

getMRCAclustersRcpp <- function(parentNumVec, childrenNumList, descendedTipsList, subtreeIndexVec, vertexRegionVec, tipNamesVec, subtreeRootNum, distTipsAncestorsMatrix, subtreeIndex, numTips, regionLabel, distLimit) {
    .Call('_CovidCluster_getMRCAclustersRcpp', PACKAGE = 'CovidCluster', parentNumVec, childrenNumList, descendedTipsList, subtreeIndexVec, vertexRegionVec, tipNamesVec, subtreeRootNum, distTipsAncestorsMatrix, subtreeIndex, numTips, regionLabel, distLimit)
}

getCopheneticClustersRcpp <- function(parentNumVec, childrenNumList, descendedTipsList, subtreeIndexVec, vertexRegionVec, tipNamesVec, subtreeRootNum, distTipsAncestorsMatrix, subtreeIndex, numTips, regionLabel, distLimit) {
    .Call('_CovidCluster_getCopheneticClustersRcpp', PACKAGE = 'CovidCluster', parentNumVec, childrenNumList, descendedTipsList, subtreeIndexVec, vertexRegionVec, tipNamesVec, subtreeRootNum, distTipsAncestorsMatrix, subtreeIndex, numTips, regionLabel, distLimit)
}

simulateNodeTimesRcpp <- function(numTips, baseRatePerIntroduction, orderedVertices, subtreeIndexVec, tipTimes, edgeMatrix, childrenNumList) {
    .Call('_CovidCluster_simulateNodeTimesRcpp', PACKAGE = 'CovidCluster', numTips, baseRatePerIntroduction, orderedVertices, subtreeIndexVec, tipTimes, edgeMatrix, childrenNumList)
}