RBedtools: Main interface to bedtools

In vinay-swamy/RBedtools: A light wrapper for the bedtools program

Description

Main interface to bedtools

Usage

RBedtools(tool, options = "", output = tmp_loc(), ...)

Arguments

tool	which bedtools function to use
options	A character vector containing options to use for tools. use bedtools intersec -h on CL to see options
output	can be either a path to a file to write to, or 'stdout' to direct output to new bedtools command
...	Arguments to pass to bed tools that are specfic to tool ie a=a.bed, b=b.bed

Value

a bedtools object that points to an output file, or bedtools command object to add to another command

vinay-swamy/RBedtools documentation built on Feb. 19, 2020, 5:15 p.m.