export_to_files: Export a Vitessce configuration to a directory of static...

In vitessce/vitessce-r: Create Interactive Single-cell Visualizations with the 'Vitessce' JavaScript Library

Export a Vitessce configuration to a directory of static files.

Description

A helper function to export files associated with a particular Vitessce configuration to a local directory. We do not recommend calling this function directly. Instead, use the export() function on a VitessceConfig instance.

Usage

export_to_files(config, with_config, base_url, out_dir)

Arguments

config	An instance of VitessceConfig
with_config	Should the config be saved in the out_dir (as a JSON file)?
base_url	If with_config is TRUE, what base_url value should be used for creation of the JSON config?
out_dir	The directory for storing exported files.

Value

If with_config = TRUE, returns the config after calling to_list with the specified base_url.

Examples

vc <- VitessceConfig$new(schema_version = "1.0.16", name = "My config")
dataset <- vc$add_dataset("My dataset")
description <- vc$add_view(dataset, Component$DESCRIPTION)
vc$layout(description)
vc$export(to = "files", out_dir = "./data")

vitessce/vitessce-r documentation built on Oct. 12, 2024, 11:47 p.m.