API for vitkl/PItools
Protein interaction data tools: retrieving data from IntAct and most other databases using PSICQUIC service
| Global functions | |
|---|---|
| MITABregionFeature | Man page Source code |
| browseMIontology | Man page Source code |
| cleanMITAB | Man page Source code |
| cleanMITAB25 | Man page Source code |
| cleanMITAB27 | Man page Source code |
| edgelist2degree | Man page |
| edgelist2degreeFreq | Man page Source code |
| edgelist2degree_slow | Man page Source code |
| extractInteractors | Man page Source code |
| fullInteractome | Man page Source code |
| generateDirName | Source code |
| humanViralDegree | Man page Source code |
| interSpeciesInteractome | Man page Source code |
| interactorFeatureTypes | Man page Source code |
| lastIntActRelease | Man page Source code |
| listReleases | Source code |
| loadAllIDProteins | Man page Source code |
| loadBioplex | Man page Source code |
| loadHumanViralPPI | Man page Source code |
| loadIntActFTP | Man page Source code |
| loadMIontology | Man page Source code |
| loadTaxIDAllLower | Man page Source code |
| loadTaxIDProteins | Man page Source code |
| print.RAW_MItab25 | Source code |
| print.RAW_MItab25_fullInteractome | Source code |
| print.RAW_MItab25_interSpeciesInteractome | Source code |
| print.RAW_MItab27 | Source code |
| print.RAW_MItab27_fullInteractome | Source code |
| print.RAW_MItab27_interSpeciesInteractome | Source code |
| print.clean_MItab25 | Source code |
| print.clean_MItab25_fullInteractome | Source code |
| print.clean_MItab25_fullInteractome_subset | Source code |
| print.clean_MItab25_interSpeciesInteractome | Source code |
| print.clean_MItab25_interSpeciesInteractome_subset | Source code |
| print.clean_MItab25_subset | Source code |
| print.clean_MItab27 | Source code |
| print.clean_MItab27_fullInteractome | Source code |
| print.clean_MItab27_fullInteractome_subset | Source code |
| print.clean_MItab27_interSpeciesInteractome | Source code |
| print.clean_MItab27_interSpeciesInteractome_subset | Source code |
| print.clean_MItab27_subset | Source code |
| printSubsetByMethodDetails | Source code |
| printSubsetByPMIDsDetails | Source code |
| queryPSICQUIC | Man page Source code |
| queryPSICQUICrlib | Man page Source code |
| randomInteractome | Man page Source code |
| readInteractome | Man page Source code |
| removeInteractionNoFASTA | Man page Source code |
| removeInteractionObsoleteID | Man page Source code |
| removeSelfLoops | Man page Source code |
| reorderMITAB25 | Man page |
| reorderMITAB27 | Man page |
| subsetMITABbyID | Man page Source code |
| subsetMITABbyMethod | Man page Source code |
| subsetMITABbyPMIDs | Man page Source code |
| uniqueNinteractions | Man page Source code |
| uniqueNinteractors | Man page Source code |
