loadMIontology: load Molecular Interaction ontology

In vitkl/PItools: Protein interaction data tools: retrieving data from IntAct and most other databases using PSICQUIC service

Description

download and read Molecular Interaction ontology into R using ontologyIndex package

Usage

loadMIontology(directory = "./", date = NULL,
  propagate_relationships = "is_a", extract_tags = "minimal")

Arguments

directory	where to keep local copy of the MI ontology
date	character, such as "2017_08_25", use specific version of ontology (local copy must be present), by default (NULL) download the latest version
propagate_relationships	parameter for reading ontology into R, details: get_ontology
extract_tags	parameter for reading ontology into R, details: get_ontology

Value

MITABdata

Author(s)

Vitalii Kleshchevnikov

vitkl/PItools documentation built on May 22, 2019, 5:35 p.m.