Man pages for vittoriofortino84/ThETA
Transcriptome-based efficacy estimates of target(gene)-disease associations
| Borda | Borda Based Rank Aggregation |
| build.tissue.specific.networks | Compile tissue-specific networks and, within these, set of... |
| centrality_score | Node centrality scores for the tissue-specific efficacy... |
| disease_tissue_zscores | Disease-associated tissue scores. |
| disease.vrnts | Retrieving Gene-Disease Assocations From DisGeNET |
| dis.rel.tissues | Significance Of Disease Modules In Tissue-Specific... |
| dis_vrnts | Disease-associated genes retrieved from DIsGeNET. |
| generate.ora.data | Over-Representation Analysis. |
| generate.ora.plots | Generate plots for the visualization of ORA results. |
| geo_gene_sets | Lists of gene sets induced by disease and gene perturbations. |
| geo.mean | Calculate The Geometric Mean |
| GS_CTD | Set of known drug-target-disease associations retrieved from... |
| GS_DBK | Set of known drug-target-disease associations retrieved from... |
| GS_TTD | Set of known drug-target-disease associations retrieved from... |
| gtexv7_zscore | Tissue-specific gene expression profiles retrieved from GTEx. |
| integrate.scores | Computing Overall Efficacy Scores |
| l2norm | Calculate The L2 Norm |
| modulation.score | Modulation Scores Compiled Between Gene Modulations And... |
| node.centrality | Compile Node Centrality Scores For A Given PPI Network. |
| novelty.plots | Generate PubMed Central Trend plots. |
| ppi_strdb_700 | Human protein-prtein interaction network retrieved from... |
| ppvpercents | Plotting function showing positive predictive values. |
| tissue.expr | Compiling Z-scores From Gene-Level Expression Profiles |
| tissue.specific.scores | Compile tissue-specific scores for a given disease. |
| tss_t2d_top50 | Lists of top 50 genes (derived from the tissue-specific... |
| visualize.graph | Interactive visualization of tissue-specific networks. |
| weighted.shortest.path | Weighted Shortest Paths compiled between a Gene and... |
