region_gene_mapping: Dataframe that maps regions to genes:

In vjbaskar/lenhancer: LASSO based enhancer identification

Dataframe that maps regions to genes:

Description

All the values are case-sensitive

Details

Colnames are case sensitive and should be preserved as shown.

chr: chromosome id

start: start of region

end: end of region

peak: name of the region.

gene: name of gene.

distance: shortest dist between region and peak. If the peak is within a gene, you can use any value that is less than "singleton_cutoff"

colnames should be cell types

the gene name and cell types are both case-sensitive

they should be used consistently across other input data as well.

vjbaskar/lenhancer documentation built on Sept. 22, 2023, 1:29 p.m.