ggFeatureSegs: generate a ggplot of segments of gene-like regions

View source: R/mc3utils.R

ggFeatureSegsR Documentation

generate a ggplot of segments of gene-like regions

Description

generate a ggplot of segments of gene-like regions

Usage

ggFeatureSegs(
  chrname = "chr15",
  start = 20450000,
  end = 20730000,
  db = EnsDb.Hsapiens.v75::EnsDb.Hsapiens.v75,
  slstyle = "UCSC",
  ylab.in = "ensembl\nnoncoding"
)

Arguments

chrname

character(1) chromosome tag

start

numeric(1) start of interval

end

numeric(1) end of interval

db

EnsDb instance for example

slstyle

character(1) tag for seqlevelsStyle

ylab.in

character(1) for use as y axis tag

Value

ggplot instance

Note

Most annotation is turned off with element_blank()

Examples

ggFeatureSegs

vjcitn/BiocOncoTK documentation built on Feb. 14, 2023, 11:56 p.m.