criEC: SummarizedExperiment with CRISPR-interrupted RNA-seq studies...
In vjcitn/abEncoTools: edx material for advanced bioconductor: ENCODE modules; open version, no vignettes
Description
SummarizedExperiment with CRISPR-interrupted RNA-seq studies from ENCODE – expected counts metric
Usage
1
Format
SummarizedExperiment
Note
Only features with gene level annotation (not necessarily 'protein_coding') in EnsDb.Hsapiens.v79
are retained – so spikeins, for example, are dropped though available in the cloud-resident tsv from
ENCODE. The 'expected counts' metric is used for quantification.
vjcitn/abEncoTools documentation built on April 4, 2020, 5:54 a.m.
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Description
SummarizedExperiment with CRISPR-interrupted RNA-seq studies from ENCODE – expected counts metric
Usage
1 |
Format
SummarizedExperiment
Note
Only features with gene level annotation (not necessarily 'protein_coding') in EnsDb.Hsapiens.v79 are retained – so spikeins, for example, are dropped though available in the cloud-resident tsv from ENCODE. The 'expected counts' metric is used for quantification.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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