writeBigTable: propagate information from a RangedSummarizedExperiment to...

In vjcitn/benchOOM: benchmarking out-of-memory strategies for R

Description

propagate information from a RangedSummarizedExperiment to google BigTable

Usage

writeBigTable(x, src, featureKeyName, sampleKeyName, tablename, ...)

Arguments

x	RangedSummarizedExperiment
src	instance of src_bigrquery
featureKeyName	character string that is used for joining features to metadata
sampleKeyName	character string that is used for joining samples to feature data
tablename	character string used as a prefix, suffixes _assay, _ranges, _coldata will be appended in the back end
...	not used

Examples

## Not run: 
 require(geuvPack)
 data(geuFPKM) # following will generate charges,
 # assumes that 'bq' is an authenticated 'src_bigquery' instance
 bq = writeBigTable( geuFPKM, bq, "GENEID", "SAMPLE", "geuFPKM" )
 bq

## End(Not run)

vjcitn/benchOOM documentation built on April 19, 2021, 11:20 p.m.