leeRPKM: supplemental data extract on RNA seq results in yeast

In vjcitn/leeBamViews: leeBamViews -- multiple yeast RNAseq samples excerpted from Lee 2009

Description

supplemental data extract on RNA seq results in yeast

Usage

data(leeRPKM)

Format

A data frame with 6291 observations on the following 16 variables.

chr

a numeric vector

strand

a numeric vector

start

a numeric vector

end

a numeric vector

name

a factor with levels LSR1 NME1 YAL001C YAL002W YAL003W ...

feature

a factor with levels CDS CDS_unchar snRNA snoRNA

orf_classification

a factor with levels Uncharacterized Verified silenced_gene3AVerified

gene

a factor with levels AAC1 AAC3 AAD10 AAD14 AAD15 AAD16 AAD3 AAD4 ...

wt.reads

a numeric vector

rrp.reads

a numeric vector

ski.reads

a numeric vector

xrn.reads

a numeric vector

wt.rpkm

a numeric vector

rrp.rpkm

a numeric vector

ski.rpkm

a numeric vector

xrn.rpkm

a numeric vector

Source

imported from supplemental data

References

Lee et al PLOS genetics December 2008 ; Volume 4 ; Issue 12 ; e1000299

Examples

data(leeRPKM)
leeRPKM[1:5,]

vjcitn/leeBamViews documentation built on Dec. 23, 2019, 7:37 p.m.