DRTraceSet: DRTraceSet class manages dose-response information for a...

In vjcitn/pogos: PharmacOGenomics Ontology Support

DRTraceSet class manages dose-response information for a single cell line, multiple drugs

Description

DRTraceSet class manages dose-response information for a single cell line, multiple drugs

DRTraceSet constructor for multiple cell lines, single drug, single dataset

Usage

## S4 method for signature 'DRTraceSet,missing'
plot(x, y, ...)

DRTraceSet(
  cell_lines = c("SK-ES-1", "TC-71", "MHH-ES-1", "HCC-56", "SK-HEP-1"),
  drug = "Irinotecan",
  dataset = "CCLE"
)

Arguments

x	for plot: instance of DRTraceSet
y	for plot: not used
...	not used
cell_lines	character vector of cell line names, must be found in 'cell_lines_v1' data of pogos package
drug	character(1) drug name in 'compounds_v1'
dataset	character(1) dataset known to pharmacodb.pmgenomics.ca

Value

instance of DRTraceSet

Note

Will query pharmacodb for relevant dose-response information

Examples

DRTraceSet()

vjcitn/pogos documentation built on Feb. 9, 2023, 5:42 p.m.