Man pages for vjcitn/restfulSE
Access matrix-like HDF5 server content or BigQuery content through a SummarizedExperiment interface
| assay-BQSummarizedExperiment-missing-method | extract assay data |
| assayNames-BQSummarizedExperiment-method | Placeholder for assay name extractor for a... |
| basic_clinvars | provide a collection of basic clinical variables to limit... |
| BQ3_Array | create BQ3_Array instance given url (filepath) and entity... |
| BQ3_Array-class | extension of DelayedArray for BigQuery content |
| BQ3_ArraySeed-class | BQ3_Array for BigQuery matrix content |
| BQ3_Matrix-class | extension of DelayedMatrix for HDF Server content |
| BQ3_Source | construct a BigQuery resource interface |
| BQ3_Source-class | a class for BigQuery tables with keys and filters baked in |
| bqConn | generate a connection to BigQuery for specific dataset |
| BQM_Array | create BQM_Array instance given url (filepath) and entity... |
| BQM_Array-class | extension of DelayedArray for BigQuery content |
| BQM_ArraySeed-class | BQM_Array for BigQuery matrix content |
| BQM_Matrix-class | extension of DelayedMatrix for HDF Server content |
| BQM_Source | construct a BigQuery resource interface, for a matrix-like... |
| BQM_Source-class | Represent information about a BigQuery resource with a... |
| BQSummarizedExperiment | Define a class to use BigQuery data through... |
| cgcConn | Simplify connection to a BigQuery dataset for the project... |
| DelayedArray-BQ3_ArraySeed-method | constructor |
| dim-BQ3_ArraySeed-method | dim derived from saved dimnames |
| dim-BQM_ArraySeed-method | dim derived from saved dimnames |
| dimnames-BQ3_ArraySeed-method | dimnames are saved in the BQ3_ArraySeed |
| dimnames-BQM_ArraySeed-method | dimnames are saved in the BQM_ArraySeed |
| goPatt | Create a data.frame with ENSEMBL and SYMBOL identifiers... |
| gtexTiss | Convenience function for access to gene-level GTEx tissues,... |
| isbCgcDatasets | Access the dataset names in the "isb-cgc" project |
| isbCgcTables | List the tables in a selected dataset |
| newDA | DelayedArray bridge |
| pancan_SE | illustrate DelayedArray assay from BigQuery backend in... |
| se1.3M | Convenience functions using HSDS server to extract tenx... |
| seByTumor | Given a BigQueryConnection to the 2017 GDC-oriented ISB TCGA... |
| seByTumor_2016 | Given a BigQueryConnection to the 2016 ISB TCGA bigtables,... |
| tasicCortex | A set of mouse cortex marker genes. |
