BQ3_Array: create BQ3_Array instance given url (filepath) and entity...

In vjcitn/restfulSE: Access matrix-like HDF5 server content or BigQuery content through a SummarizedExperiment interface

create BQ3_Array instance given url (filepath) and entity (host) name

Description

create BQ3_Array instance given url (filepath) and entity (host) name

Usage

BQ3_Array(filepath)

Arguments

filepath

a BQ3_Source instance

Value

an instance of DelayedArray-class

Examples

#
# authentication issues may arise.  if you are authorized
# to use bigquery with GPC project isb-cgc, a token may
# be generated through the following
# options(httr_oob_default=TRUE)
# example(BQ3_Source)
# a browser authentication event may occur, or if you are in
# a browserless session, a URL will be emitted, possibly in
# the context of warnings ... browse to this URL and an
# authentication event will occur, and a token will be provided
# this can be provided back to the R session to allow the
# query to proceed
#
if (interactive()) {
  con = cgcConn("TCGA_hg38_data_v0")
  ss = BQ3_Source(con, filterval="TCGA-LUAD")
  BQ3_Array(ss)
}

vjcitn/restfulSE documentation built on Nov. 1, 2022, 7:33 a.m.