ctxsearch: ssrch demo with metadata documents from 68 cancer...

Description Usage Value Note Examples

View source: R/app3.R

Description

ssrch demo with metadata documents from 68 cancer transcriptomics studies

Usage

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Value

Simply starts an app.

Note

The metadata were derived by extracting sample.attributes fields from a search with github.com/seandavi/SRAdbV2. The sample.attributes content varies between studies and sometimes between experiments within studies. The field sets were unified with the sampleAtts function of github.com/vjcitn/HumanTranscriptomeCompendium. After unification records were stacked and CSVs were written.

Examples

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if (interactive()) {
  oask = options()$example.ask
  options(example.ask=FALSE)
  try(ctxsearch2())
  options(example.ask=oask)
}

vjcitn/ssrch documentation built on Oct. 25, 2019, 11:29 p.m.