tests/testthat/test_tenXplore.R

In vjcitn/tenXplore: ontological exploration of scRNA-seq of 1.3 million mouse neurons from 10x genomics

library(tenXplore)

context("ontology processing")

test_that("children compute", {
  library(ontoProc)
  efoOnto = getOnto("efoOnto")
  cc = children_TAG("EFO:0000324", efoOnto) 
  ss = secLevGen("B cell", efoOnto)
  cl = slot(ss, "cleanFrame")
  expect_true(class(ss) == "TermSet")
  expect_true("mature B cell" %in% cl[,1])
})