produce.dockerfile: Produce a Docker image for Jupyter notebook.

In vladchimescu/RdocsJupyter: Conversion of Rmd, knitr and Sweave docs into Jupyter notebook format

Description

produce.dockerfile generates a Dockerfile which can be used to build a Docker image for running Jupyter notebook in Docker without the local installation of Jupyter notebook

Usage

produce.dockerfile(vignette)

Arguments

vignette

Name of the Jupyter notebook file. Absolute path has to be prepended if the notebook is not in R working directory.

Details

The function scans the Jupyter notebook for R package dependencies and produces a script packages.R for installing these R packages in the Docker image.

The Docker image is built from the generated Dockerfile, which is written in the same directory as the Jupyter notebook. In order to build a Docker image for running the vignette you don't need IPython Notebook installed on your machine. If you installed Docker, simply run in command line

$ docker build -t imagename .

in the same directory as the Dockerfile. After building the Docker image for your Jupyter notebook, check the operating system-specific commands for running Jupyter notebooks in Docker containers on the following web page https://hub.docker.com/r/vladkim/rnaseq/

vladchimescu/RdocsJupyter documentation built on May 3, 2019, 6:15 p.m.