add_format_tag_from_vcf: Add a FORMAT tag from a VCF file to a master table

In vladimirsouza/variantCallingFromIsoSeq: Figure out how to call varaints from Iso-Seq data

Add a FORMAT tag from a VCF file to a master table

Description

The function adds to 'input_table' the new column <tagName>_<methodName>, where <tagName> is 'tag' in lower case and <methodName> is 'method_name'.

Usage

add_format_tag_from_vcf(input_table, method_name, tag, vcf_file)

Arguments

input_table	A data.frame. The input master table.
method_name	A 1-length string. The name of the method.
tag	A 1-length string. The name of the tag to add. It must be exactly how the tag is written in the VCF file (case sensitive).
vcf_file	A 1-length string. The path to the VCF file from which the tag is extracted.

Value

A data.frame.

vladimirsouza/variantCallingFromIsoSeq documentation built on March 29, 2023, 1:20 a.m.