Proteins-constructor: Constructor for Proteins class object

In vladpetyuk/simMSnSet: Simulation of MSnSet Objects

Description

Constructor for Proteins class object

Usage

Proteins(nProt = 20, propChanging = 0.2, fdrPeptide = 0.05,
  fdrMatching = 0.01, lambda = 2, meanIoinizationIntensity = 1e+06,
  missThreshQuantile = 0.05, missThreshSharpness = 10, noise = 1,
  pepCounts = NULL, ...)

Arguments

nProt	number of proteins
lambda	parameter of Poisson distribution controlling number of peptides per protein
meanIoinizationIntensity	numeric value of an average peptide ionization intensity
noise	measurement noise. So far just a single value for all peptides/proteins.
pepCounts	(optional) integer vector with number of peptides per each protein. If provided then lambda is ignored.

Value

Proteins-class object

vladpetyuk/simMSnSet documentation built on May 3, 2019, 6:16 p.m.