R/dataDocs.R

In vllorens/metaester: Simulate metatranscriptomics datasets

#' Genes of Faecalibacterium prausnitzii
#'
#' Fasta file containing the genes of F. prausnitzii A2-165, retrieved from IMG
#' This file contains only the coding regions of F. prausnitzii, with one sequence
#' per gene.
#'
#' @format A list with 3553 elements
#' @source \url{https://img.jgi.doe.gov/cgi-bin/m/main.cgi?section=TaxonDetail&page=taxonDetail&taxon_oid=645951831}
"fprausnitzii"

#' Genes of Enterococcus faecalis
#'
#' Fasta file containing the genes of E. faecalis 62, retrieved from IMG
#' This file contains only the coding regions of E. faecalis, with one sequence
#' per gene.
#'
#' @format A list with 3094 elements
#' @source \url{https://img.jgi.doe.gov/cgi-bin/m/main.cgi?section=TaxonDetail&page=taxonDetail&taxon_oid=650377929}
"efaecalis"

#' Genes of Blautia obeum
#'
#' Fasta file containing the genes of B. obeum A2-162, retrieved from IMG
#' This file contains only the coding regions of B. obeum, with one sequence
#' per gene.
#'
#' @format A list with 3210 elements
#' @source \url{https://img.jgi.doe.gov/cgi-bin/m/main.cgi?section=TaxonDetail&page=taxonDetail&taxon_oid=650377967}
"bobeum"

#' Genes of Roseburia intestinalis
#'
#' Fasta file containing the genes of R. intestinalis L1-82, retrieved from IMG
#' This file contains only the coding regions of R. intestinalis, with one sequence
#' per gene.
#'
#' @format A list with 4865 elements
#' @source \url{https://img.jgi.doe.gov/cgi-bin/m/main.cgi?section=TaxonDetail&page=taxonDetail&taxon_oid=2562617159}
"rintestinalis"


#' Genes of Lactobacillus johnsonii
#'
#' Fasta file containing the genes of L. johnsonii NCC 533, retrieved from IMG
#' This file contains only the coding regions of L. johnsonii, with one sequence
#' per gene.
#'
#' @format A list with 1941 elements
#' @source \url{https://img.jgi.doe.gov/cgi-bin/m/main.cgi?section=TaxonDetail&page=taxonDetail&taxon_oid=637000140}
"ljohnsonii"