## if(existsMethod("initialize", "envProtoClass"))
## removeMethod("initialize", "envProtoClass")
## if(existsMethod("initialize", "protoContext"))
## removeMethod("initialize", "protoContext")
## if(existsMethod("initialize", "protoCell"))
## removeMethod("initialize", "protoCell")
## SetsClass("protoECall",
## representation(formName = "character"),
## prototype(formName = "<undefined_protoForm>"),
## contains = "call")
## setMethod("initialize", "protoECall",
## function(.Object, ...){
## .Object <- callNextMethod()
## .Object@.Data <-
## substitute(e(formName),
## list(formName = as.name(.Object@formName)))
## .Object
## })
## .getOrCreateForm <- function(bindName, whereEnv)
## if(exists(bindName, envir = get(".forms", envir = whereEnv))){
## get(bindName, envir = whereEnv)
## }else{
## new("protoForm")
## }
## .replaceDots <- function(names){
## if(length(dot_here <- grep(".", names, fixed = TRUE))){
## warning("\".\" was replaced with \"_\" in ",
## paste(names[dot_here], collapse=", "))
## names <- gsub(".", "_", names, fixed = TRUE)
## }
## names
## }
## areIdenticalPBM <- function(pbm1, pbm2){
## names1 <- ls(pbm1[[".cells"]], all.names = T)
## names2 <- ls(pbm2[[".cells"]], all.names = T)
## reserved <- character()
## if(length(diff1 <- setdiff(setdiff(names1, names2), reserved)))
## message("folowing cells are found in pbm1 and not in pbm2: \n",
## paste(diff1, collapse = ", "))
## if(length(diff2 <- setdiff(setdiff(names2, names1), reserved)))
## message("folowing cells are found in pbm2 and not in pbm1: \n",
## paste(diff2, collapse = ", "))
## if(length(diff1) == 0 && length(diff2) == 0){
## diffs <- sapply(names1, function(nm) {
## cat(" --> ", nm, "\n")
## areIdentical(pbm1[[".cells"]][[nm]], pbm2[[".cells"]][[nm]])
## })
## diffs
## }else{
## TRUE
## }
## }
## fullType <- function(part_type, obj){
## if(is(obj, "protoContainer"))
## .complete_partial_name(part_type, container)
## else if(is(obj, "protoContext"))
## .complete_partial_name(part_type, get(".cells", envir = obj))
## else
## stop("obj must be of class protoContainer or protoContext, suplied an object of class \"", class(obj), "\"")
## }
## .existsPartial <- function(name, container){
## "TRUE if object with partial name NAME exists in the container"
## all_names <- .get_all_names(container)
## match <- charmatch(name, all_names)
## if(is.na(match)||match == 0L)
## FALSE
## else
## TRUE
## }
## .first_protoObject <- function(envProtoObj, name = "*", container = ".cells"){
## ## "Return the first envProtoObject in which \nthe NAME is installed in the CONTAINER "
## ## env <- as.environment(envProtoObject)
## ## if(exists(name, env[[container]])){
## ## while(!exists(name, env[[container]], inherits = FALSE))
## ## env <- as.environment(get(".prototype", envir = env))
## ## return(invisible(env))
## ## }else{
## ## return(invisible(NULL))
## ## }
## }
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