Ensure the following R packages are installed on your environment. OmicKriging utilises these packages.
NB: These libraries are required by the OmicKriging.
The phenotype file used in your analysis should;
- Contain phenotypes on the columns and samples on the rows
- Not contain NA values, these break the analysis pipeline.
- Mutate the NA values with column averages for each phenotype.
- The individual IDs used in the phenotype file should be same as those in the grm file.
- Contain an equal number or a subset of the individuals in the grm matrix.
- E.g
if a grm file has 997 individuals the phenotype should have 997 individuals or less.
- If the phenotype file contains many individuals than those in the grm it will break the analysis pipeline.
IID
.IID
and family id FID
in the first two columns. Phenotypes should start from column 3 to the end.Add the following code to your website.
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