Man pages for wStockhausen/rPIBKC
Package to run the PIBKC stock assessment
| calcBmsy | Calculate B_{MSY} by averaging over specified time interval |
| calcCIs | Compute confidence intervals |
| calcFofl | Calculate F_{OFL} using the Tier 4 harvest control rule |
| calcMMBMating | Calculate projected MMB at mating. |
| calcOFL | Calculate the OFL using a Tier 4 approach. |
| calcPrjMMB | Calculate projected MMMB at mating based on a fishing... |
| calcTheta | Calculate theta, the average exploitation rate on MMB... |
| doAssessment | Do assessment |
| fisheryYear | Returns the crab fishery year as a character string |
| getFisheryData | Read the fishery data from a csv file and return it as a... |
| getPath2REM | Get the path to the ADMB random effects model (REM) used for... |
| getRunCommands | Generate run commands for an ADMB model run |
| getSurveyData | Read survey data (abundance, biomass) from a csv file and... |
| plotAvgdData | Plot averaged data. |
| plotRawData | Plot raw survey and fishery data. |
| surveyAveraging.IV | Smooth survey data using inverse variance (IV) averaging |
| surveyAveraging.RE | Smooth/interpolate survey data using a random effects/kalman... |
