plotRawData: Plot raw survey and fishery data.

In wStockhausen/rPIBKC: Package to run the PIBKC stock assessment

Plot raw survey and fishery data.

Description

Function to plot raw survey and fishery data.

Usage

plotRawData(
  srvData = NULL,
  fshData = NULL,
  yr2 = 1990,
  pdfType = "lognormal",
  ci = 0.95,
  verbose = FALSE,
  showPlot = FALSE
)

Arguments

srvData	survey data dataframe, path to csv file, or NULL
fshData	fisheries data dataframe, path to csv file, or NULL
yr2	starting year for 2nd arithmetic scale plot
pdfType	probability distribution for error bars
ci	confidence interval for error bar plots
verbose	flag (T/F) to print diagnostics, etc
showPlot	flag (T/F) to show plots immediately

Details

Biomass units are assumed to be in t, abundance units in ones.

Value

list with named elements

• srvData - dataframe w/ abundance is in ones and biomass is in t

• fshData - dataframe w/ catch biomass is in t

• plots - list with ggplot2 objects

  • retained catch time series

  • retained catch time series, recent time period

  • discard catch time series

  • discard catch time seies, recent time period

  • survey biomass time series

  • survey biomass time series, recent time period

  • survey biomass time series, log10-scale

wStockhausen/rPIBKC documentation built on April 25, 2023, 6:50 p.m.