Man pages for wStockhausen/tcsamFisheryDataADFG
Functions to process ADFG crab fishery data
| adfg.calcRetainedCatchZCs | Calculate expanded annual retained catch size compositions by... |
| adfg.calcScaleForInputSSs | Calculate the scale factor for size composition input sample... |
| adfg.calcSSsFromZCs | Calculate sample sizes for size compositions |
| adfg.calcTotalCatchAB | Calculate estimated total catch abundance and biomass by... |
| adfg.calcTotalCatchZCs | Calculate expanded annual total catch size compositions by... |
| adfgConvert_DateMMDDYYYYtoFisheryYear | Convert a vector of dates as mm-dd-yyyy to numeric fishery... |
| adfgConvert_DateYYYYMMDDtoFisheryYear | Convert a vector of dates as yyyy-mm-dd to numeric fishery... |
| adfgConvert_FisheryCodes | parse a 4-character ADFG "fishery" code |
| adfgConvert_FisheryNames | Convert ADFG fishery names to canonical assessment names |
| adfgConvert_LatLonsToStatAreas | Convert lat-lon coordinates to ADFG stat areas |
| adfgConvert_MaturityCodes | Convert ADFG measure pot codes to... |
| adfgConvert_SexCodes | Convert ADFG sex codes to character labels |
| adfgConvert_ShellConditionCodes | Convert ADFG shell condition codes to character labels |
| adfgConvert_StatAreasToLatLons | Convert ADFG stat areas to lat-lon coordinates |
| adfgEffort_calcAtSeaObserverEffort | Calculate at-sea observer sampling effort from measure pot... |
| adfg.ExportWideZCs | Export size compositions in wide format |
| adfg.ExtractRawZCsFromMPD | Get annual total catch size compositions by crab fishery from... |
| adfg.getAtSeaObserverEffort | Get at-sea observer effort from a csv file |
| adfg.getRetainedCatchZCs | Get annual retained catch size compositions by crab fishery... |
| adfg.getTotalCatchZCs | Get annual total catch size compositions by crab fishery from... |
| adfgRead_DirectedEffortFile | Read the directed fishery effort from a csv file |
| adfgRead_DSD | Extract dockside data (DSD) as a tibble from a csv file |
| adfgRead_MPD | Extract measure pot data (MPD) as a tibble from a csv file |
| adfgRead_RetainedCatchABs | Get annual retained catch abundance and biomass by crab... |
| adfgRead_SPD | Extract summary pot data (SPD) as a tibble from a csv file |
| adfgRead_TotalCatchABs | Get annual total catch abundance and biomass by crab fishery... |
| adfg.ScaleAndRebinZCs | Scale and rebin size compositions |
| adfg.ScaleInputSSs | Calculate the "input" sample sizes to TCSAM02 for ADFG size... |
| adfgWrite_TCSAMInputFile | Write ADFG data to a TCSAM input file |
| adfgZCs_CalcRetZCsFromDSD | Calculate retained catch size compositions from dockside data |
| adfgZCs_CalcTotZCsFromMPD | Calculate size compositions from measure pot data |
