TCGAutils-package: TCGAutils: Helper functions for working with TCGA and...
In waldronlab/BiocInterfaces: TCGA utility functions for data management
TCGAutils-package R Documentation
TCGAutils: Helper functions for working with TCGA and MultiAssayExperiment
data
Description
TCGAutils is a toolbox to work with TCGA specific datasets. It allows the
user to manipulate and translate TCGA barcodes, conveniently convert a list
of data files to GRangesList. Take
datasets from GISTIC and return a
SummarizedExperiment
class object. The package also provides functions for working with data from
the curatedTCGAData
experiment data package. It provides convenience functions for extracting
subtype metadata data and adding clinical data to existing
MultiAssayExperiment
objects.
Author(s)
Maintainer: Marcel Ramos marcel.ramos@sph.cuny.edu (ORCID)
Authors:
Lucas Schiffer
Levi Waldron
Other contributors:
Sean Davis [contributor]
See Also
Useful links:
Report bugs at https://github.com/waldronlab/TCGAutils/issues
waldronlab/BiocInterfaces documentation built on Dec. 19, 2024, 2:07 p.m.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
| TCGAutils-package | R Documentation |
TCGAutils: Helper functions for working with TCGA and MultiAssayExperiment data
Description
TCGAutils is a toolbox to work with TCGA specific datasets. It allows the
user to manipulate and translate TCGA barcodes, conveniently convert a list
of data files to GRangesList. Take
datasets from GISTIC and return a
SummarizedExperiment
class object. The package also provides functions for working with data from
the curatedTCGAData
experiment data package. It provides convenience functions for extracting
subtype metadata data and adding clinical data to existing
MultiAssayExperiment
objects.
Author(s)
Maintainer: Marcel Ramos marcel.ramos@sph.cuny.edu (ORCID)
Authors:
Lucas Schiffer
Levi Waldron
Other contributors:
Sean Davis [contributor]
See Also
Useful links:
Report bugs at https://github.com/waldronlab/TCGAutils/issues
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Embedding an R snippet on your website
Add the following code to your website.
For more information on customizing the embed code, read Embedding Snippets.