saveNupload: A function to save serialized objects and upload to...

In waldronlab/MultiAssayExperiment.TCGA: Pipeline for the integration of multi-omics experiments in Bioconductor

A function to save serialized objects and upload to ExperimentHub

Description

This function requires the user to obtain AWS CLI credentials to ExperimentHub for it to work.

Usage

saveNupload(
  dataList,
  cancer,
  directory,
  version,
  upload,
  fileExt = ".rda",
  container
)

Arguments

dataList	A List of experiment data for a MultiAssayExperiment
cancer	A single string indicating the TCGA cancer code
directory	The file location for saving serialized data pieces
version	character(1) A version string for versioning data runs (such as "1.0.0")
upload	logical(1) Whether to upload the data to the AWS S3 bucket
fileExt	character(1) The character pattern for matching files in the directory location for upload (excludes 'Methylation' datasets which are handled separately)
container	'character(1)' The name of the container on Azure

Value

Function saves and uploads data to the ExperimentHub AWS S3 bucket

waldronlab/MultiAssayExperiment.TCGA documentation built on May 19, 2023, 6:06 p.m.