API for waldronlab/TCGAutils
TCGA utility functions for data management
| Global functions | |
|---|---|
| .addLeadingZero | Source code |
| .barcode_cases | Source code |
| .barcode_files | Source code |
| .buildIDframe | Source code |
| .checkBarcodes | Source code |
| .checkCodesAgainstData | Source code |
| .checkHas | Source code |
| .checkPkgsAvail | Source code |
| .checkSampleCodes | Source code |
| .check_ids_found | Source code |
| .cleanExpand | Source code |
| .collect_suffixes | Source code |
| .consistentNumbers | Source code |
| .convertTo | Source code |
| .findBarcodeCol | Source code |
| .findBarcodeLimit | Source code |
| .findNAColumns | Source code |
| .find_strands_col | Source code |
| .find_with_xfix | Source code |
| .getGN | Source code |
| .getLinks | Source code |
| .getRangesOfCpG | Source code |
| .getRangesOfMir | Man page Source code |
| .getRangesOfSYMBOLS | Man page Source code |
| .isSingleType | Source code |
| .isSingleValue | Source code |
| .isSummarizedExperiment | Source code |
| .makeListRanges | Man page Source code |
| .matchSort | Source code |
| .nestedlisttodf | Source code |
| .orderedDF | Source code |
| .replaceHighProp | Source code |
| .samplesInData | Source code |
| .standardBarcodes | Source code |
| .strMatch | Source code |
| .strsep | Source code |
| .subword_id | Source code |
| .tallySameLength | Source code |
| .uniqueDelim | Source code |
| .unnest_df | Source code |
| CpGtoRanges | Man page Source code |
| ID-translation | Man page |
| TCGAbarcode | Man page Source code |
| TCGAbiospec | Man page Source code |
| TCGAprimaryTumors | Man page Source code |
| TCGAsampleSelect | Man page Source code |
| TCGAsplitAssays | Man page Source code |
| TCGAutils | Man page |
| TCGAutils-package | Man page |
| UUIDhistory | Man page Source code |
| UUIDtoBarcode | Man page Source code |
| UUIDtoUUID | Man page Source code |
| barcodeToUUID | Man page Source code |
| builds | Man page |
| clinicalNames | Man page |
| correctBuild | Man page Source code |
| curatedTCGAData-helpers | Man page |
| diseaseCodes | Man page |
| extractBuild | Man page Source code |
| filenameToBarcode | Man page Source code |
| findGRangesCols | Man page |
| generateMap | Man page Source code |
| getClinicalNames | Man page Source code |
| getFileName | Man page Source code |
| getSubtypeMap | Man page Source code |
| hidden-helpers | Man page |
| human_builds | Source code |
| imputeAssay | Man page Source code |
| isCorrect | Man page Source code |
| makeGRangesListFromCopyNumber | Man page Source code |
| makeGRangesListFromExonFiles | Man page Source code |
| mergeColData | Man page Source code |
| mirToRanges | Man page Source code |
| oncoPrintTCGA | Man page Source code |
| qreduceTCGA | Man page Source code |
| sampleTables | Man page Source code |
| sampleTypes | Man page |
| simplifyTCGA | Man page Source code |
| symbolsToRanges | Man page Source code |
| translateBuild | Man page Source code |
| trimColData | Man page Source code |
| uniformBuilds | Man page Source code |
